SCINet Analysis
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CLC Server
This document assumes that a licensed copy of CLC Genomics WorkBench 22 is installed locally and available to the user.
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Guide to Installing R, Python, and Perl Packages
The popular R, Perl and Python languages have many packages/modules available. Some of the packages are installed on Ceres and are available with the r/perl/python_2/python_3 modules. To see the list of installed packages, visit the Preinstalled Software List page or use
module help <module_name>
command. If users need packages that are not available, they can either request VRSC to add packages, or they can download and install packages in their home/project directories. We recommend installing packages in the project directories since collaborators on the same project most probably would need same packages. In addition, home quotas are much lower than quotas for project directories. -
SMRTLink/SMRTAnalysis using Command Line
Guide to use SMRTLink via CLI -
Galaxy on SCINet
Using Galaxy on SCINet -
Geneious Software Guide
Geneious Software Use Guide