SCINet, the AI-COE, and other providers regularly host a variety of events and trainings. Information on how to attend these events will be posted on this page closer to the event date. You might want to take a look at events we’ve hosted in the past, too.
If you have a training request that is not being offered at this time, please complete this short training request form to let us know.
Keep an eye on this page for more info about upcoming events!
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Bioinformatics Foundations · RNAseq and Variant calling pipelines in Galaxy
In this workshop, participants will work through a complete RNA-seq analysis and a variant calling workflow using SCINet’s Galaxy interface.
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Bioinformatics Foundations · Automating Bioinformatics Pipelines with Nextflow
This hands-on workshop introduces Nextflow, a workflow management system built for scalable, reproducible computational pipelines that can run seamlessly across laptops, HPC clusters, and cloud environments. Starting from simple examples, we’ll progressively build toward a real-world bioinformatics pipeline — learning how Nextflow’s dataflow programming model and channel-based design enable elegant parallel processing of multiple files, portable integration of tools via containers and modules, and production-ready pipelines that follow nf-core community best practices.
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Bioinformatics Foundations · Automating Bioinformatics Pipelines with Snakemake
This hands-on workshop introduces Snakemake, a workflow management system that brings the readability of Python to scalable, reproducible computational pipelines. We will start with simple examples and build to a real-world bioinformatics pipeline — learning how Snakemake’s rule-based, file-driven approach automatically determines job dependencies, handles parallel execution, and integrates seamlessly with Python scripts and virtual environments to produce publication-ready outputs.