SCINet, the AI-COE, and other providers regularly host a variety of events and trainings. Information on how to attend these events will be posted on this page closer to the event date. You might want to take a look at events we’ve hosted in the past, too.
If you have a training request that is not being offered at this time, please complete this short training request form to let us know.
Keep an eye on this page for more info about upcoming events!
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Omics Webinar · Improving Production Traits in Poultry through Genome Editing
To recieve an invitation to upcoming webinars, fill out the Translational Omics Working Group registration survey.
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Introduction to RNA-seq Analysis
In this workshop, we will provide an overview of RNA-sequencing (RNA-seq) technology and best practices for experimental design. Participants will also explore preprocessing steps, read alignment (de novo, pseudoalignment, and to a reference genome), and differential expression analysis using DESeq2. We will also introduce tools for functional analysis and determining the biological relevance of the results.
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RNA for Genome Annotation and Reproducibility in Bioinformatics
This workshop demonstrates how RNA data can be used for genome annotation. Participants will explore using RNA-derived evidence to improve genome annotations, distinguish coding from non-coding regions, and validate. We will also explore strategies for increasing reproducibility in bioinformatics.
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SCINet Corner · Commonly used Slurm parameters and the new “ceres” partition
- Understanding partitions and accounts on SCINet’s supercomputers.
- Specifying the partition, account, and time limit for compute jobs.
- Using the new “ceres” partition on Ceres.
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From Reads to Variants
DeepVariant is a DNA sequence variant caller that uses a convolutional neural network (CNN) to call genotypes relative to a reference genome assembly. In this workshop, we will discuss a workflow for calling variants from whole-genome data for multiple individuals.