High-Performance Computing. Training. High-Speed Networking.
What is SCINet?
The SCINet initiative is an effort by the USDA Agricultural Research Service (ARS) to grow USDA’s research capacity by providing scientists with access to high-performance computing clusters, high-speed networking for data transfer, and training in scientific computing.
Upcoming Trainings and Events
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Bioinformatics Foundations · From reads to variants: GATK & Deepvariant
This workshop will introduce participants to variant calling using two methods: Genome analysis toolkit (GATK) and Deep Variant. We will develop a complete workflow for calling variants from whole-genome data for multiple individuals.
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SCINet Corner · Working with Slurm, part 2: monitoring and analyzing Slurm jobs
This SCINet Corner will demonstrate how to monitor the progress and resource usage of running jobs and how to analyze the resource efficiency of completed jobs.
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Bioinformatics Foundations · RNAseq and Variant calling pipelines in Galaxy
In this workshop, participants will work through a complete RNA-seq analysis and a variant calling workflow using SCINet’s Galaxy interface.
Find out how SCINet can enable your research
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Working Groups
Information about how our collaborators currently use SCINet
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Fellowship Opportunities
SCINet-funded research fellowship opportunities for PhD and MS level graduates
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How to Use SCINet
Quick Start guide to getting up and running with SCINet
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Running Analyses
Guides for running different analyses
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Frequently Asked Questions
Answers to common questions asked about SCINet
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Need Help?
Find who you need to contact for specific issues or requests