- Provided by: SCINet Corner
- Registration: Register Here
The SCINet Corner is a recurring virtual gathering to provide a space for people to meet and discuss SCINet-related items. The main idea is that SCINet users with similar interests can get help from each other. This virtual meeting will provide space for, and facilitate, these interactions once a month.
Location: SpatialChat
Upcoming Sessions
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Login nodes: What they are and how to use them
This presentation will cover the purpose and proper use of login nodes.
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Data transfer using Globus
Data transfer to, from, and among SCINet systems (Ceres, Atlas, and Juno) using Globus
SCINet Corner Recordings
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HPC Software Module System and Placing Requests for Software
This presentation will cover modules in the context of Ceres and Atlas, how to call and use them, examples of frequently used modules, and what to do if your software isn’t available.
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Tidyverse for data cleaning and wrangling
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Introduction to plotting with ggplot2
- Accessing RStudio through Open OnDemand
- Graphing concepts in creating basic plots using the gapminder data set
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Plotting in Python with plotnine
- How to access plotnine in Open OnDemand JupyterLab
- Data formats expected by plotnine
- Graphing concepts in creating basic plots
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Open Q&A
The SCINet Corner is a recurring virtual gathering to provide a space for people to meet and discuss SCINet-related items.
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Introduction to Slurm: How to run computing jobs on SCINet clusters
- The common parameters you can specify, e.g., number of cores and wall time limit.
- How to request an interactive job
- How to write and submit batch scripts
- How to check the job queue
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Open OnDemand: Web-based access to SCINet
How to access SCINet computing resources and applications through your browser. This presentation will cover how to log on to Open OnDemand for Ceres and Atlas, followed by an overview of popular applications available on Open OnDemand.
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Galaxy: a web-based platform for data-intensive bioinformatics analyses
This presentation will cover what Galaxy is, logging in, uploading data, and examples of data analysis on Galaxy
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Data Transfer
Data transfer to, from, and among SCINet systems (Ceres, Atlas, and Juno) using Globus or scp.
25 mins of instruction followed by open discussion and Q&A
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Command line tricks in Ceres
We will continue talking about tips and tricks related to Ceres command line techniques.
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Command Line Tips Continued
We will continue talking about tips and tricks related to Ceres command line techniques.
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Tips and Tricks on the Command Line Continued
We will be continuing with more tips and tricks on the command line.
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More tips and tricks on the command line
We will be continuing with more tips and tricks on the command line.
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Command Line Tips and Tricks
In continuation of the theme to re-introduce users to SCINet, we will be covering some tips and tricks on the command line that help you do certain routine jobs faster.
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Reintroduction to SCINet
We are starting off this fall with a re-introduction to SCINet
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Python in Jupyter
Alex presented on how to use Jupyter as a Python coding environment
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Getting started with Python programming
Alex presented on the fundamentals of getting started with Python programming.
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Continues Exploration of R and Intro to dplyr
Viswanathan Satheesh continues exploration of R after the previous SCINet Corner (November 3, 2022) and provides an introduction to dplyr.
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Introduction to ggplot2
Viswanathan Satheesh provides an introduction to programming in R with emphasis on ggplot2.
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A Brief Introduction to R
Viswanathan Satheesh presented on A Brief Introduction to R.