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Automating Bioinformatics Pipelines with Nextflow


  • Provided by: ISU, SCINet Office

This hands-on workshop introduces Nextflow, a workflow management system built for scalable, reproducible computational pipelines that can run seamlessly across laptops, HPC clusters, and cloud environments. Starting from simple examples, we’ll progressively build toward a real-world bioinformatics pipeline — learning how Nextflow’s dataflow programming model and channel-based design enable elegant parallel processing of multiple files, portable integration of tools via containers and modules, and production-ready pipelines that follow nf-core community best practices.